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2) If you would like to submit a specific link or to notify us of a modified link,please send us an email, but remember that we reserve the right to choose the links we want to include !

3) Links to protein sequence, 3D structure and 2D-gel analytical tools are provided on ExPASy's Proteomics tools page.

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Protein db | 3D structure db | 2D-PAGE & MS db | DNA/RNA db | Carbohydrates db | Organisms specific db | Human mutation db | Genes/proteins specific db | PTM db | Phylogenetics db | Microarrays db | Patents | References | Dict., protocols & nomenclat. | Biol. soft. & db catalogs | Gateways | Biol. journals & publishers | Biol. societies | Biocomputing servers | Biotech. companies | Bioinformatics companies | Misc. medical ref. sites | Misc. scientific ref. sites

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Protein related databases
UniProt - the universal protein resource UniProt Knowledgebase - consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated) PMD - Protein Mutant db InterPro - Integrated Resources of Proteins Domains and Functional Sites PROSITE - Database of protein families and domains BLOCKS - BLOCKS db Gene3D - Structural and Functional Annotation of Protein Families Panther - Functional classification system Pfam - Protein families db (HMM derived) [Mirrors at St. Louis (USA), Sanger Institute, UK, Karolinska Institutet (Sweden)] PIRSF - Protein classification system PRINTS - Protein Motif fingerprint db ProDom - Protein domain db (Automatically generated) PROTOMAP - An automatic hierarchical classification of UniProtKB/Swiss-Prot proteins SBASE - SBASE domain db SMART - Simple Modular Architecture Research Tool Superfamily - Library of profile HMMs representing all proteins of known structure STRING - Search Tool for the Retrieval of Interacting Genes/Proteins TIGRFAMs - TIGR protein families db BIND - Biomolecular Interaction Network Database DIP - Database of Interacting Proteins MINT - Molecular INTeraction database HPRD - Human Protein Reference Database IntAct BioGRID - General Repository for Interaction Dataset PPI - JCB Protein-Protein Interaction Website
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Protein 3D structure related databases
PDB - Protein Data Bank BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy SWISS-MODEL Repository - Automatically generated protein models db ModBase - Db of comparative protein structure models CATH - UCL BSM structural classification of proteins SCOP - Structural classification of proteins [Mirror at USA | Israel | Singapore | Australia] Molecules To Go - Molecules To Go (formerly known as Molecules R Us), browser for PDB BMM Domain Server - Biomolecular Modelling Laboratory (ICRF) protein domain server ReLiBase - Receptor/ligand complexes db [Mirror in USA] TOPS - Protein topology atlas CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD)) HSSP - Homology-derived secondary structure of proteins db MutaProt - Comparison of PDB files which differ by point mutations SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules BioImage - Biological image db (contains imaging data on macromolecules)
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Proteomics databases and links
Links to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services Proteomics Links page
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Nucleotide and related databases
EMBL - EMBL Nucleotide sequence db (EBI) Genbank - GenBank Nucleotide Sequence db (NCBI) DDBJ - DNA Data Bank of Japan dbEST - dbEST (Expressed Sequence Tags) db (NCBI) dbSTS - dbSTS (Sequence Tagged Sites) db (NCBI) AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA sequences db Codon Usage Db EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] ISIS - Intron Sequence and Information System RDP - Ribosomal db Project gRNAs db - Guide RNA db PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db ssu rRNA - Small ribosomal subunit at the European ribosomal RNA database lsu rRNA - Large ribosomal subunit at the European ribosomal RNA database 5S rRNA - 5S ribosomal RNA db tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of Bayreuth uRNA db RNA editing - RNA editing site RNAmod db - RNA modification db TelDB - Multimedia Telomere Resource MPDB - Molecular probe db VectorDB - Vector sequence db
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Carbohydrates resources
FCCA - Forum Carbohydrates Coming of Age GlycoSuiteDB - Db of glycan structures Monosacharide browser - Space filling Fischer projection for monosaccharides Thorkild's lectin page - Gateway to lectins
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Species specific databases:
Human
OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneClinics - Medical genetics knowledge base GDB - Genome Data Base GeneCards - Db integrating information on human genes UDB - Unified db for Human genome mapping Ensembl Human genome browser UCSC human genome working draft TIGR HGI - TIGR Human Gene Index Hs UniGene - Human transcripts in GenBank (EST clusters) STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs) Allgenes.org - Human predicted gene index/catalog GenLink - Human genetics resource GeneLynx - Portal to the human genome HUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA...) HUNT - Human Novel Transcripts CGAP - Cancer Genome Anatomy Project MGC - Mammalian Gene Collection SCDb - Stem cell db Homophila - Human Disease to Drosophila gene db Human Protein Atlas - Displays the expression and localization of proteins in a large variety of normal human tissues and cancer cells Chr1 at Rutgers - Human chromosome 1 at Rutgers Chr1 at Sanger - Sanger Center chromosome 1 project Chr1 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 1 Chr2 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 2 Chr 3 at DDBJ Chr3 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 3 Chr4 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 4 Chr5 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 5 Chr6 at Sanger - Sanger Center chromosome 6 project Chr6 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 6 Chr7 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 7 Chr8 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 8 Chr9 at Sanger - Sanger Center chromosome 1 project Chr9 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 9 Chr9 - Human chromosome 9 db Chr10 at Sanger - Sanger Center chromosome 10 project Chr10 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 10 Chr11 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 11 Chr12 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 12 Chr13 at Sanger - Sanger Center chromosome 13 project Chr13 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 13 Chr14 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 14 Chr15 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 15 Chr16 TIGR - Human chromosome 16 db at TIGR Chr16 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 16 Chr17 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 17 Chr18 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 18 Chr18 - Human chromosome 18 at Boston Children's Hospital Chr19 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 19 Chr20 at Sanger - Sanger Center chromosome 20 project Chr20 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 20 Chr21 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 21 Chr22 at Sanger - Sanger Center chromosome 22 project Chr22 at HGC - Human genome center for chromosome 22 Chr22 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 22 ChrX at Sanger - Sanger Center chromosome 1 project ChrX Swiss-Prot list - Links to Swiss-Prot entries from human chromosome X ChrY Swiss-Prot list - Links to Swiss-Prot entries from human chromosome Y H-InvDB Database - Human gene db, with cDNA clones available from six high throughput cDNA sequencing projects Human Chromosome1 Launchpad Human Chromosome2 Launchpad Human Chromosome3 Launchpad Human Chromosome4 Launchpad Human Chromosome5 Launchpad Human Chromosome6 Launchpad Human Chromosome7 Launchpad Human Chromosome8 Launchpad Human Chromosome9 Launchpad Human Chromosome10 Launchpad Human Chromosome11 Launchpad Human Chromosome12 Launchpad Human Chromosome13 Launchpad Human Chromosome14 Launchpad Human Chromosome15 Launchpad Human Chromosome16 Launchpad Human Chromosome17 Launchpad Human Chromosome18 Launchpad Human Chromosome19 Launchpad Human Chromosome20 Launchpad Human Chromosome21 Launchpad Human Chromosome22 Launchpad Human ChromosomeX Launchpad Human ChromosomeY Launchpad
Vertebrates
OMIA - Online Mendelian Inheritance in Animals MGI - Mouse Genome Informatics (includes MGD) [Mirror in Australia] Ensembl Mouse genome browser TIGR MGI - TIGR Mouse Gene Index Mm UniGene - Mouse transcripts in GenBank (EST clusters) MGC - Mammalian Gene Collection Mouse gene knockouts db RGD - Rat genome db RatMAP - Rat genome db TIGR RGI - TIGR Rat Gene Index Rn Unigene - Rat transcripts in GenBank (EST clusters) BOVMAP - Bovine genome db (in France) DGP - Dog Genome Project MIS - Mendelian Inheritance in Sheep ArkDB - Cat, Chicken, Cow, Deer, Horse, Pig, Quail, Sheep, Turkey genome databases FishBase - Global information system on fishes Fugu genome project Fugu - HGMP Resource Centre Fugu Project (Fugu rubripes) Ensembl Fugu genome browser Medakafish - Mekada fish (Oryzias latipes) server ArkDB - Sea Bass, Salmon genome databases ZFIN - Zebrafish Information Network Ensembl Zebrafish genome browser
Mitochondrion and chloroplast
GOBASE - Organelle Genome Database MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear gen C.caldarium - Cyanidium caldarium strain RK1 chloroplast genome
Insects
Drosophila Swiss-Prot list - Links to Drosophila Swiss-Prot entries FlyBase - Drosophila genetic and molecular db BDGP - Berkeley Drosophila Genome Project FlyView - Drosophila image db Homophila - Human Disease to Drosophila gene db Mosquito Genomics AnoDB - Anopheles gambiae db Ensembl Mosquito genome browser
Invertebrates
WormBase - C.elegans db [Mirror at Sanger] C.elegans WWW server - at University of Texas Southwestern C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins NEXTDB - The Nematode Expression Pattern DataBase C.elegans Swiss-Prot list - Links to C.elegans Swiss-Prot entries WormPep - C.elegans proteins db WorfDB - C. elegans ORFeome cloning project DictyBase - Dictyostelium discoideum db DictyDb - Dictyostelium discoideum db Dictyostelium Genome Sequencing project at BCM Dictyostelium discoideum genome project at IENA Dicty_cDB - Dictyostelium discoideum cDNA project Cone shells Web site Parasite genomes db and resources PlasmoDB - P.falciparum genome db Malaria - WHO - Malaria db (from WHO) P.falciparum Sanger - P.falciparum genome project at Sanger PFDB - Plasmodium falciparum Genome db P.falciparum - Plasmodium falciparum Gene Sequence Tag project Malaria parasite metabolic pathways Giardia lamblia genome project LGN - Leishmania Genome Network ToxoDB - Toxoplasma gondii genome project Trypanosoma brucei genome project Trypanosoma cruzi genome project kDNA - Kinetoplast Minicircle Sequence db
Plants
NAL - AGIS - Access to many plant genome databases at the National Agricultural Library Mendel - Plant gene nomenclature database from CPGN FLAGdb++ - Integrative database around plant genomes Arabidopsis Swiss-Prot list - Links to A.thaliana WWW sites and to Swiss-Prot entries TAIR - The Arabidopsis Information Resource MATDB - MIPS Arabidopsis thaliana db TIGR At - TIGR Arabidopsis thaliana db AMPL - Arabidopsis Membrane Protein Library Arabidopsis at PlaCe - Site with info on P450, glucosyltransferases, etc. Gramene - A comparative mapping resource for grains RGP - Rice Genome Research Program Oryzabase - Japanese rice genome db Rice genome project at Wisconsin Rice-research.org - Monsanto rice genome site TIGR OsGI - TIGR Rice Genome project BeanGenes - Beans genome db ChlamyDB - Chlamydomonas reinhardtii genome db CoffeeDNA - Coffee genomics web site CottonDB - Cotton genome db MaizeDb - Maize genome db Pisum sativum (pea) web site (in russian) TIGR Potato - TIGR Potato Functional Genomics project TIGR GmGI - TIGR Soybean Gene Index Snapdragon (A.majus) web site DragonDB - Snapdragon Database SorghumDB - Sorghum genome db SoyBase - Soybean genome db SoyBase metabolic db - Metabolic subset of the soybean genome db TIGR LeGI - TIGR Tomato Gene Index Dendrome - Forest trees genome db
Fungi
FGSC - Fungal Genetics Stock Center Genomic Exploration of the Hemiascomycete Yeasts FGI - Fungal genome initiative at the Broad Institute Fungal genome databases at MIPS Fungal genomes at the Sanger Institute FGR - Fungal Genome Resource Yeast Swiss-Prot list - Links to S.cerevisiae WWW sites and to Swiss-Prot entries CYGD - MIPS Comprehensive Yeast Genome db SGD - Saccharomyces genome db Yeast snoRNA - Yeast small nucleolar RNAs db YTPdb - Yeast Transport Protein db YMPL - Yeast Membrane Protein Library Mitochondrial Proteome db YEASTGFP - Yeast GFP Fusion Localization db TRIPLES - TRansposon-Insertion Phenotypes, Localization, and Expression in Saccharomyces YRC - Yeast Resource Center PathCalling - Yeast Interaction Database PROPHECY - PROfiling of PHEnotypic Characteristics in Yeast SCMD - Saccharomyces Cerevisiae Morphological db GPofYPF - Global Profiling of Yeast Protein Function Saccharomyces Genomes - Finding functional features in Saccharomyces Genomes by phylogenetic footprinting Yeast Comparative Genomics S.pombe Swiss-Prot list - Links to S.pombe WWW sites and to Swiss-Prot entries GeneDB S.Pombe - Schizosaccharomyces pombe GeneDB S.pombe genome project Forsburg lab pombe pages AGD - Ashbya genome db Aspergillus nidulans db Aspergillus fumigatus Genome db Aspergillus web site C. albicans Swiss-Prot list - Links to C.albicans WWW sites and to Swiss-Prot entries CGD - Candida Genome db C. albicans physical map - Candida albicans server at the Univ. of Minnesota Candida albicans pages - Candida albicans at the NRC/BRI C.albicans genome annotation - Agabian Lab Web db CandidaDB - Candida albicans genome db Cryptococcus neoformans Genome Project Cryptococcus neoformans db - Candida Genome db CunicuList - Encephalitozoon cuniculi Genome db FGDB - Fusarium graminearum Genome db MNCDB - MIPS Neurospora crassa db Neurospora crassa db NGP - Neurospora crassa genome project at New Mexico Neurospora crassa Gene List MUMDB - MIPS Ustilago maydis db PC - Pneumocystis carinii genome project Phycomyces Web site - Resource site for scientists working on Phycomyces
Bacteria
WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomenclature List of complete bacterial proteomes in Swiss-Prot (HAMAP) CBS - CBS Genome Atlas Database CMR - TIGR Comprehensive Microbial Ressource GIB - Genome information broker for Microbial genomes GeneQuiz GOLD Genomes On-line Database HOBACGEN - Homologous Bacterial Genes db Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen BPGD - Bacterial polysaccharide gene db Bacterial quorum sensing MicrobeWorld - Educational site on microbes E.coli Swiss-Prot list - Links to E.coli WWW sites and to Swiss-Prot entries EcoWeb / EcoGene - Very comprehensive E.coli db ECCE - E.coli Cell Envelope Protein Data Collection ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabolism EchoBASE E.coli databases GenProtEC - E.coli genome and proteome db Colibri - E.coli genome db from Pasteur Institute ECGC - E.coli Genome Center at Wisconsin University DDBJ E.coli - E.coli home page at DDBJ Regulon DB B.subtilis Swiss-Prot list - Links to B.subtilis WWW sites and to Swiss-Prot entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db DBTBS - Db of B.subtilis promoters and transcription factors A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project B.bronchiseptica - Bordetella bronchiseptica strain RB50 genome project at Sanger Institute B.parapertussis - Bordetella parapertussis strain 12822 genome project at Sanger Institute B.pertussis - Bordetella pertussis strain Tohama I genome project at Sanger Institute BbDB - TIGR Borrelia burgdorferi genome db B.aphidicola Swiss-Prot list - Links to B.aphidicola Swiss-Prot entries C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project C.muridarum - Chlamydia muridarum strain MoPn genome db at TIGR C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at TIGR C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db Chromobacterium violaceum C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute E.ruminantium - Ehrlichia ruminantium (formerly Cowdria ruminantium) genome project at Sanger Institute DrDB - TIGR Deinococcus radiodurans strain R1 genome db F.tularensis - Francisella tularensis genome WWW site H.influenzae Swiss-Prot list - Links to H.influenzae WWW sites and to Swiss-Prot entries HiDB - Haemophilus influenzae genome db at TIGR H.pylori Swiss-Prot list - Links to H.pylori WWW sites and to Swiss-Prot entries HpDB - Helicobacter pylori strain 26695 genome db at TIGR PyloriGene - Helicobacter pylori genomic db L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db L.plantarum - Lactobacillus plantarum genome project ListiList - Listeria monocytogenes and Listeria innocua genome db M.bovis - Mycobacterium bovis strain AF2122/97 genome project Leproma - Mycobacterium leprae strain TN genome db M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute TubercuList - Mycobacterium tuberculosis strain H37Rv genome db MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at TIGR M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute M.tuberculosis secreted proteins M.tuberculosis structural genomics consortium M.genitalium Swiss-Prot list - Links to M.genitalium Swiss-Prot entries MgDB - Mycoplasma genitalium genome db at TIGR M.pneumoniae Swiss-Prot list - Links to M.pneumoniae Swiss-Prot entries M.pneumoniae - Mycoplasma pneumoniae genome project MypuList - Mycoplasma pulmonis genome db Mycoplasma synoviae genome db N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at TIGR N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project N.europaea - Nitrosomonas europaea genome project P.marinus - Prochlorococcus marinus genome project P.aeruginosa project - Pseudomonas aeruginosa genome project R.solanacearum - Ralstonia solanacearum genome project Rhizobium pNGR234a Swiss-Prot list - Links to Rhizobium plasmid pNGR234a Swiss-Prot entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.palustris - Rhodopseudomonas palustris genome project RicBase - Rickettsia conorii strain Malish 7 genome project R.prowazekii Swiss-Prot list - Links to Rickettsia prowazekii Swiss-Prot entries S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute S.typhimurium Swiss-Prot list - Links to S.typhimurium Swiss-Prot entries RhizoBase - Sinorhizobium loti genome project S.meliloti - Sinorhizobium meliloti genome project S.aureus - Staphylococcus aureus strain NCTC 8325 genome project S.mutans - Streptococcus mutans strain UAB159 genome project S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute S.suis - Streptococcus suis genome project at Sanger Institute S.uberis - Streptococcus uberis genome project at Sanger Institute S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project PCC 6803 Swiss-Prot list - Links to Synechocystis PCC 6803 Swiss-Prot entries CyanoBase - Synechocystis PCC 6803 db TmDB - Thermotoga maritima genome db at TIGR TpDB - Treponema pallidum genome db at TIGR T.whipplei - Tropheryma whipplei genome project at Sanger Institute U.urealyticum - Ureaplasma urealyticum genome WWW site VcDB - Vibrio cholerae genome db at TIGR Xanthomonas - Xanthomonas genome projects X.fastidiosa - Xylella fastidiosa genome WWW site Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute
Archaea
List of complete archaeal proteomes in Swiss-Prot (HAMAP) A.pernix - Aeropyrum pernix K1 genome db AfDB - Archaeoglobus fulgidus genome db at TIGR Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project M.jannaschii Swiss-Prot list - Links to M.jannaschii Swiss-Prot entries MjDB - Methanococcus jannaschii genome db at TIGR Pyrococcus abyssi genome and re-annotation db P.abyssi - Pyrococcus abyssi genome project and db P.horikoshii - Pyrococcus horikoshii OT3 db T.acidophilum - Thermoplasma acidophilum genome project T.volcanium - Thermoplasma volcanium genome project
Viruses and phages
All the virology on the WWW - links to virology WWW servers by David M. Sander ICTVdB - Universal virus taxonomy db Adenoviruses web site HCVDB - Hepatitis C virus db HIV - HIV and related species db HPV - Human papillomaviruses db Picornavirus - Picornavirus home page and access to db Tobamoviruses PhageBase Bacteriophage ecology group GOLD - Genomes On-line db DOGS - Database of genome sizes
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Human mutation databases/resources
HGMD - Human Gene Mutation db SVD - EBI Sequence variation db HGVbase GeneDis - Human genetic disease db The SNP consortium dbSNP - Human single nucleotide polymorphism (SNP) db ALFRED - Allele Frequency Db SeattleSNPs - UW-FHCRC Variation Discovery Resource PicSNP - Catalog of non-synonymous SNP List of mutation databases from OMIM List of mutation databases from IMT (Finland) ADAbase - Human adenosine deaminase (ADA) mutation db ADB - Albinism db (Mutations in human genes causing albinism) Albumin Web site AR mutations - Human androgen receptor mutation db Antithrombin mutation db Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies BLMbase - Human BLM mutation db (Bloom syndrome) BTKbase - Human BTK mutation db (X-linked agammaglobulinemia) CD3Ebase - Human CD3E mutation db CD3Gbase - Human CD3G mutation db CD40Lbase - Human CD40 ligand mutation db COL1/3 mutation - Human Type I and III collagen mutation db Connexin-deafness - Human connexins mutation db CFTR mutation - Human cystic fibrosis mutation db (CFTR) KMbloodDB - Blood disease genes db KMbrainDB - Brain disease genes db KMcancerDB - Cancer disease genes db KMearDB - Ear disease genes db KMeyeDB - Eye disease genes db KMheartDB - Heart disease genes db KMmuscleDB - Muscle disease genes db KMsyndromeDB MaiDB (autoimmune) FVII mutation - Human Factor VII mutation db HAeMB - Human Factor IX mutation db (Haemophilia B) G6PD - Human G6PD deficiency resource G6PDdb - Human G6PD mutation db GNAS1 - Human GNAS1 mutation db HbVar - Hemoglobin variants db Hereditary hearing loss homepage LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) LHR - Human luteinizing hormone (LH) receptor mutation db NCF1base - Human NCF1 mutation db NCF2base - Human NCF2 mutation db Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db OCRL1 - OCRL1 mutation db (Lowe Syndrome) OTCase - Human ornithine transcarbamylase (OTCase) website Cytochrome P450 alleles nomenclature p53 mutation db - University of Tokyo p53 mutation db Germline p53 mutation db - University of Prague db of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH) mutation db PAX2 mutation - Human PAX2 mutation db PAX6 mutation - Human PAX6 mutation db Prion - Prion and prion disease web site RAG1base - Human RAG1 mutation db RAG2base - Human RAG2 mutation db RB1base - Human retinoblastoma-associated protein (RB) mutation db RetNet - Retinal Information Network Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases Alsod.org - ALS/SOD1 genetic mutations db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2) TGDB - Tumor gene db VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vWF) mutation db WRN - Human WRN mutation db (Warner disease) X-ALD mutation - Human ABCD1 mutation db
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Gene(s)/protein(s) specific databases/resources
Human ABC transporters ABCISSE - ABC systems : Information on Sequence Structure and Evolution ADAMTS - Apte lab ADAMTS and ADAMTSL resource Human albumin Web site Allergens in Swiss-Prot - Nomenclature and index of allergens in Swiss-Prot Allergen sequence db Allergome - A db of allergenic molecules SDAP - Structural database of allergenic proteins Alginate genes - Pseudomomonas alginate production genes Aminoacyl-tRNA synthetases in Swiss-Prot - List of aminoacyl-tRNA synthetases in Swiss-Prot AARSDB - Aminoacyl-tRNA synthetases AARSDB - Aminoacyl-tRNA synthetases db from P.Dessen Androgen Receptor Gene Mutations Database AMSDb - Antimicrobial sequences db Antibody resource page - Links to antibody related Web resources AraC-XylS - AraC/xylS transcriptional regulator family db TFII - Basal transcription factors Blood group antigens in Swiss-Prot BCGD - Breast cancer genes db from MBCR BRENDA - Db of enzyme functional data EF-hand CaBP - EF-hand calcium-binding proteins db CAZy - Carbohydrate-Active enZYmes Web site CBS domain - Cystathionine Beta Synthase domain WWW page CD antigens in Swiss-Prot - Nomenclature for surface proteins of human leucocytes (CD) Chaperonin - Information on GroEL and GroES chaperonins cpnDB - A Chaperonin Database CSDBase - Cold shock domain db COPE - Cytokines On-line Pathfinder Encyclopedia dbCFC - Cytokine family cDNA db R&D Systems' Cytokine mini reviews DExH/D protein family db DnaB helicase DPInteract - DNA-Proteins interactions db EMP - Enzymes and Metabolic Pathways db ENZYME - Enzymes nomenclature db Worthington enzyme manual EpoDB - Erythropoiesis gene expression db (Epo GED) ESTHER - Esterases and alpha/beta hydrolase enzymes Estrogen Receptor Resource Expansins web site Modules - Extracellular proteins modules (domains) FADPNR - FAD-dependent pyridine nucleotide oxidoreductases Flavodoxins FYVE finger domain Globin - Globin gene server Glucocorticoid Receptor Resource Glycosyl hydrolases in Swiss-Prot - Nomenclature and index of glycosyl hydrolases in Swiss-Prot 7TM in Swiss-Prot - List of G protein coupled receptors in Swiss-Prot GPCRDB - G protein-coupled receptor db (7TM) at EMBL GRR - Glucocorticoid receptor resource Arabidopsis Glucosyltransferases Web site GnRH - Gonadotropin-releasing hormones (GnRH) family Histone - Histones db HIVdb - HIV protease db HORDE - Human Olfactory Receptor Data Exploratorium Hox proteins in Swiss-Prot - Vertebrate homeotic Hox proteins: nomenclature and index of Swiss-Prot entries IMGT - ImMunoGeneTics db [Mirror at EBI] InBase - Inteins db from the New England Biolabs Integrins Initiation factors in Swiss-Prot - List and index of translation initiation factors in Swiss-Prot KEGG - Kyoto Encyclopedia of Genes and Genomes Klotho - Biochemical compounds declarative db LGIC - Ligand Gated Ion Channel subunit db LED - Lipase Engineering Database MDB - Metalloprotein Site Database and Browser Metallothioneins in Swiss-Prot - Nomenclature and index of metallothioneins in Swiss-Prot MT - Metallothioneins MHCPEP - MHC binding peptides db Mitochondrial carriers pages from Nelson's lab Mutator - Transposases, Mutator family MutS - MutS family Neurotrophic factors NPD - Nuclear Protein db NucleaRDB - Federated db on nuclear receptors P450 pages from Nelson's lab P450 - Directory of P450-containing systems Arabidopsis P450 Web site IARC p53 db - IARC db of somatic p53 mutations PDE - Phosphodiesterases Plant Peroxidases Peptidases in Swiss-Prot - Nomenclature and index of peptidases in Swiss-Prot MEROPS - Peptidase db Prolysis - Proteases and inhibitors server PLACE - Plant cis-acting regulatory DNA elements db KinBase PKR - Protein Kinase Resource PatBase - P-type ATPase db PPAR - Peroxisome Proliferator-Activated Receptor resource Proteoglycans Phytochromes - Computer analysis of phytochrome sequences PUMA2 - Evolutionary Analysis of Metabolism Reactome - a curated knowledgebase of biological pathways RecA - RecA protein REBASE - Restriction enzymes and methylases db Restriction enzymes/methylases in Swiss-Prot - List of restriction enzymes and methylases in Swiss-Prot Ribosomal proteins in Swiss-Prot - Families and index of ribosomal proteins in Swiss-Prot RNase P - Ribonuclease P db SPAD - Signaling pathway db SRPDB - Signal Recognition Particle db SNF2 - SNF2 family TRANSFAC - Transcription factors db TRANSPATH - Signal Transduction Browser TC-DB - Transport Classification System from Milton Saier VDR - Vitamin D Nuclear Receptor WD-repeat - WD-repeat proteins family Wnt gene homepage WormPep - C.elegans proteins db YTPdb - Yeast Transport Protein db Conotoxins - Information on conotoxins from a Web site on cone shells International venom and toxin db Scorpion - Scorpion toxin db Snake - Snake toxin db
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Post-translational modifications databases and resources
DSDBASE - Disulfide database (derived from 3D data) GlycoSuiteDB - Db of glycan structures LIPID MAPS - LIPID Metabolites And Pathways Strategy O-GlycBase - O-glycosylated proteins db PhosphoBase - Phosphorylation sites db Phosphorylation site db - Bacterial and archaeal phosphorylation sites resource PhosphoSite - Db of phosphorylation sites in human and mouse proteomes DOLOP Db of bacterial lipoproteins RESID - Db of Amino Acid Modifications Delta Mass - Db of mass of Post-Translational Modifications
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Phylogenetics and taxonomy databases & resources
COG - Phylogenetic classification of proteins encoded in complete genomes EGO - Eukaryotic Gene Orthologs InParanoid - Eukaryotic ortholog groups Metazome - Phylogenomic analysis of metazoan gene families OMA - Orthologs Matrix Project (OMA) TreeBASE - Relational db of phylogenetic information TreeFam - Tree families database of phylogenetic trees of animal genes The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms The PhylOgenetic Web Repeater (POWER) - perform phylogenetic analysis NCBI Taxonomy Browser NEWT - UniProt Taxonomy Browser CluSTr - Automatic classification of UniProtKB proteins into groups of related proteins ProtoNet - Classification of the proteins into hierarchical clusters
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Microarray databases and resources
ArrayExpress - MicroArray informatics at the EBI CleanEx - database of gene expression profiles ExpressDB - Yeast and E.coli RNA expression db GeneX - Gene Expression project GEO - Gene Expression Omnibus RAD - RNA abundance db SMD - Stanford microarray db MILANO - Microarray Literature-based Annotation
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Patents databases
DPD - DNA Patent db Ag Patents - Agricultural Biotechnology patents from the USDA USPTO patent db - USA Patent and Trademark Office patent db Esp@cenet - Patent information database from the European Patent Office (worldwide coverage) Freepatentsonline - access to millions of patents
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References (bibliographic databases)
PubMed Medline server AGRICOLA - AGRICultural OnLine Access; ref. db from NAL Article@INIST - Scientific and Technical Information Institute articles and monographs db Korean Journals Abstract db SeqAnalRef - Sequence analysis bibliographic references
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Dictionaries, protocols, courses, nomenclature, etc.
BioABACUS - Biotechnology ABbreviation and ACronym Uncovering Service BioTech's life science dictionary DCB - Dictionary of cell biology by Julian Dow AAnP - IUPAC-IUBMB nomenclature for amino acids and peptides Amino acid properties - Physico and chemical information on amino acids Amino acids 2 - Another information page on amino acids (from Berlin Free Univ.) Delta Mass - Db of mass of Post-Translational Modifications Carbohydrates - IUPAC-IUBMB nomenclature for carbohydrates Genetic code Viewer - Genetic code viewer at EBI Glossary of Biochemistry and Molecular Biology - by David M. Glick Primer on molecular genetics - from the US Department of Energy Protease protocols - methods to cleave protein sequences Ion Source - Mass spectrometry resource Sequence similarity searches primer - from Keith Robison / Harvard Pedestrian guide to analysing sequence databases - from Burkhard Rost and Reinard Schneider Weight matrices for sequence similarity scoring - from David Wheeler / MBCR Biocomputing courses resource list - Syllabi for a variety of courses and tutorials on Bioinformatics (from VSNS BCD) Quick Guides - EMBnet Quick guides BioComputing Hypertext Coursebook - from VSNS BCD BioActivity - Protein sequence and structure analysis: a practical guide Homology modelling course - from the EMBL Cold Spring Harbor Protocols Molecular Biology Protocols Molecular biology protocols - from MBS (Molecular Biology Shortcuts) Protease protocols - methods to cleave protein sequences Abbreviations of chemical compounds List of nomenclature related references for proteins - from Swiss-Prot GO - Gene Ontology Consortium WWW site HUGO nomenclature committee JCBN - IUPAC-IUB Joint commission on Biochemical Nomenclature (JCBN) Nobel Foundation Website The Nobel prize Internet Archive NCBI Taxonomy List of Bacterial Names with Standing in Nomenclature ISIS - International Species Information System Species 2000 - Project to provide in an electronic form the names and taxonomy of all known species
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Biological software and databases catalog servers
CLC Free Workbench - A desktop program including a number of algorithms for DNA, RNA, and protein analyses. Available for Linux, MacOS X and Windows CLC Protein Workbench - A desktop program including a number of advanced algorithms for protein sequence analysis. Available for Linux, MacOS X and Windows BioCatalog - The BioCatalog at EBI Quantum Pharmaceuticals - Drug Discovery and Computational Chemistry Software Software library from Genamics.com DBCAT - Databases catalog at INFOBIOGEN
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Gateways (portals) to Life Science resources
Art's Biotechnology Resource Biofind - Biotechnology industry information, gossip and news Bioinformatik.de - Web directory for bioinformatics BioNetbook - Institut Pasteur gateway to biosites Bioplanet - The bioinformatics homepage BSL - BioScience links from Russia Biotaq.com BioTech BioView - Site for Biopharmaceutical jobs, news, information and resources Genomics Website at Wiley Highveld.com - Internet Directory of Biology and Biotechnology LabVelocity - Resource for biotechnology and life science Microbiologyprocedure.com - Providing information on Microbiology basics, techniques, procedures, methods, applications and diseases Molecular Biology Gateway from Horizon Press Molecular Station - Molecular Biology Protocols and Bioinformatics Network Science Protein Web - Everything Protein, from 20 Essential Amino Acids to Whey protein Vs Soya protein ReNaBI - French bioinformatics platforms network SIPHS - Question & Answer System for Life Sciences Researchers Swiss Life Sciences database The Genomics Center
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Biological journals and publishers
Resources linking to journals home pages
Swiss-Prot journals list - Provides direct links to most biological journals home pages PubList.com - Internet Directory of Publications e-journals.org - Electronic journals directory Medical Journal Online - List of journals from the University of Texas Research Medical Library Journal index from Genamics.com Journal index from Horizon Scientific Press HUM-MOLGEN - HUM-MOLGEN communication forum home page for journals TOC Highwire Press links to top Science Journals Medline full text lists - List of journals in Medline with Web sites ISSN - International Standard Serial Number organization
Publishers
Allen Press, Inc. AMA - American Medical Association publications ACS - American Chemistry Society publications AP - Academic Press Alaken - Alaken, Inc. ASM - American Society of Microbiology publications Annual Reviews Arnold Publishers BioMed Central - The Open Access Publisher Bio-IT World - Technology for the Life Sciences BioScientifica Ltd Birkhauser Verlag Basel Blackwell Science BMJ - British Medical Journal publishing group Cell Press Churchill Livingstone COB - Company of Biologists Ltd CRC Press, Inc. CSHL - Cold Spring Harbor Laboratory Press CSIRO - CSIRO Publishing CUP - Cambridge University Press CJP - Carden Jennings Publishing Co. Ltd Marcel Dekker, Inc. Elsevier Science FASEB publications G+B - Gordon and Breach Publishing Group HighWire Press Horizon Scientific Press Humana Press, Inc. IOS Press IR - Inter-Research Science Publisher Futura Publishing Company Karger AG Editrice Kurtis JL - John Libbey Eurotext LW&W - Lippincott Williams and Wilkins Martin Dunitz Publishers Mary Ann Liebert Masson Mosby Munksgaard IAPC NAUKA - NAUKA International Academic Publishing Company (Russia) NRC Research Press OUP - Oxford University Press Parthenon Publishing Group Pharmaceutical Press Portland Press Pulsus Group Inc. Rockfeller University Press Sage Science Press SGM - Society for General Microbiology publications SIR - SIR Publishing Slack, Inc. Spektrum Akademischer Verlag Springer-Verlag T&F - Taylor & Francis Ltd [Mirror in the U.K.] Thieme University of Chicago Press Urban and Fischer Verlag VSP - VSP International Science Publishers VZN - Verlag der Zeitschrift fur Naturforschung W de G - Walter de Gruyter and Co. WBS - W.B. Saunders Co. Wiley - John Wiley and Sons [Mirror in the U.K.] Wiley-VCH
Bioinformatics journals and newsletters
Bioinformatics Briefings in Bioinformatics ISB - In Silico Biology BioInformer - EBI's newsletter embnet.news - EMBnet's newsletter NCBI Newsletter PDB Quaterly Newsletter B6 - Bulletin d'information du Service d'Informatique Scientifique (Pasteur Institute / FR) BioInform - Global Bioinformatics new service BITS - Bioinformatics Information Technology and Systems
Genomic newsletters
Human Genome Project Information FGN - Fungal Genetics Newsletter Rice Genome Newsletter WBG - Worm Breeder's Gazette
Miscellaneous
IJC - Internet Journal of Chemistry Plant Gene Register
Biotechnology trade journals
BioCentury Biotech Industry Supplier Registry BioWorld Online Drug Discovery and Development GEN - Genetic Engineering News
General science journals
Nature New Scientist La Recherche Science Scientific American The Scientist ScienceDaily Magazine Science News Online CNN Sci-Tech - CNN Science and Technology
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Some biological societies and organizations
APS - American Peptide Society ASCB - The American Society for Cell Biology ASHG - American Society of Human Genetics ATCC - American Type Culture Collection Biochemical Society BSA - Botanical Society of America CSBMCB - Canadian Society of Biochemistry and Molecular and Cell Biology EFBF - European Federation of Biophysics EGF - European Genetics Foundation EMBO - European Molecular Biology Organization ESEB - European Society for Evolutionary Biology ESHG - European Society of Human Genetics FAOBMB - Federation of Asian and Oceanian Biochemists and Molecular Biologists FASEB - Federation of American Societies for Experimental Biology FEBS - Federation of European Biochemistry Societies HUGO - HUman Genome Organization HUPO - HUman Proteome Organization IUBMB - International Union of Biochemistry and Molecular Biology IUPAC - International Union of Pure and Applied Chemistry MSA - Mycological Society of America PPI - Plasma Proteome Institute PRF - Protein Research Foundation SDB - Society for Developmental Biology SGM - Society for General Microbiology SICB - Society for Integrative and Comparative Biology DOI - Digital Object Identifier foundation BioJava Project - International association of developers of Java tools for bioinformatics Bioperl Project - International association of developers of Perl tools for bioinformatics Biopython Project - International association of developers of Python tools for bioinformatics ISCB - International Society for Computational Biology OMG LSR - Object Management Group Life Science Research task force
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